ziemertlab/artswebapp-beta repository overview

⁠ARTS Web Server Overview

This is a sub repository for the Antibiotic Resistant Target Seeker (ARTS).

This can be used to view results generated from the public server at https://arts.ziemertlab.com⁠ or using output from the main analysis pipeline at https://github.com/ZiemertLab/ARTS⁠

For usage of the web server see https://arts.ziemertlab.com/help⁠

⁠Quickstart with Docker:

• Firstly, if you don't have Docker, you should install the Docker engine on your computer. Please check out the latest version of Docker on the official website.⁠

• Edit desired paths to run Docker Images:

I- Desired Result Directory: /my/path/to/result_folders:/results/
II- Desired Log Directory: /my/path/to/log_file:/run/

• Enter the required paths and run the command:

docker run -it -v /my/path/to/results_folders:/results/ -v /my/path/to/log_file:/run/ -p 5000:5000 --rm ziemertlab/artswebapp-beta:latest

• Click your local server on your browser:

    http://127.0.0.1:5000/

• Click result page to view ARTS results:

    http://127.0.0.1:5000/results

• Enter the result file name and click "View Report":

Note: Make sure your result folders are in the specified results folder path in the command.

• You can view your ARTS results now!

⁠Support

If you have any issues please feel free to contact us at [email protected]⁠

⁠Licence

This software is licenced under the GPLv3. See LICENCE.txt for details.

⁠Publication

If you found ARTS to be helpful, please cite us⁠:

Mungan,M.D., Alanjary,M., Blin,K., Weber,T., Medema,M.H. and Ziemert,N. (2020) ARTS 2.0: feature updates and expansion of the Antibiotic Resistant Target Seeker for comparative genome mining. Nucleic Acids Res.,10.1093/nar/gkaa374⁠

Alanjary,M., Kronmiller,B., Adamek,M., Blin,K., Weber,T., Huson,D., Philmus,B. and Ziemert,N. (2017) The Antibiotic Resistant Target Seeker (ARTS), an exploration engine for antibiotic cluster prioritization and novel drug target discovery. Nucleic Acids Res.,10.1093/nar/gkx360⁠