ziemertlab/funartswebapp repository overview

⁠FunARTS Web Server Overview

This is a sub repository for the Fungal bioActive compound Resistant Target Seeker (FunARTS).

This can be used to view results generated from the public server at https://funarts.ziemertlab.com⁠ or using output from the main analysis pipeline at https://github.com/ZiemertLab/FunARTS⁠

For usage of the web server see https://funarts.ziemertlab.com/help⁠

⁠Installation of FunARTS Web Server

There are three options for installing FunARTS Web Server:

• Using Docker Images
• Using Anaconda/Miniconda
• Manual Installation for Linux/Ubuntu

⁠Quickstart with Docker Image:

• Firstly, if you don't have Docker, you should install the Docker engine on your computer. Please check out the latest version of Docker on the official website.⁠

• Edit desired paths to run Docker Images:

I- Desired Result Directory: /my/path/to/result_folders:/results/
II- Desired Log Directory: /my/path/to/log_file:/run/

• Enter the required paths and run the command:

docker run -it -v /my/path/to/results:/results/ -v /my/path/to/log_file:/run/ -p 5000:5000 --rm ziemertlab/funartswebapp:latest

• Click your local server on your browser:

    http://127.0.0.1:5000/

• Click result page to view FunARTS results:

    http://127.0.0.1:5000/results

• Enter the result file name and click "View Report":

Note: Make sure your result folders are in the specified results folder path in the command.

• You can view your FunARTS results now!

⁠For other options to install Funarts Web Server, please see https://github.com/ZiemertLab/FunARTSwebapp⁠

⁠Support

If you have any issues please feel free to contact us at [email protected]⁠

⁠Licence

This software is licenced under the GPLv3. See LICENCE.txt for details.

⁠Publication

If you found FunARTS to be helpful, please cite us⁠:

Yılmaz, T. M., Mungan, M. D., Berasategui, A., & Ziemert, N. (2023). FunARTS, the Fungal bioActive compound Resistant Target Seeker, an exploration engine for target-directed genome mining in fungi. Nucleic Acids Research