zlemmon/ampseq repository overview

⁠Container of tools for running Amplicon Sequencing

docker pull zlemmon/ampseq docker run zlemmon/ampseq:latest CMD

⁠Contents

• r-base
  • gplots
  • ggplot2
  • gridExtra
  • gtools
  • tidyverse
  • reshape2
  • getopt
  • CrispRVariants
  • Biostrings
• r-base-dev
• curl
• python3
• pip
• awscli
• conda
  • bwa
  • cutadapt
  • fastqc
  • samtools
  • trim-galore
  • umi_tools