RNAseq analysis downstream of the nf-core/rnaseq pipeline

RNAseq analysis pipeline in Nextflow

Rcwl-rnaseq is a collection of Bioinformatics tools to buid RNASeq pipeline using Rcwl package.

my rnaseq from github

Copy of nfcore rnaseq with seqtk

Contains accessory functions for rnaseq workflow

Container for CRUKCI RNASeq course

RNASeq Docker Images for nextflow pipelines

{nextflow,bebosudo}/rnaseq-nf + pip install awscli

Docker environment supporting BI RNAseq course

testing changes to the main rnaseq repo

rnaseq dockerfiles

Development fork Docker image for the nf-core/RNAseq pipeline.

Optimized code for Unique Molecular Identifier (UMI) barcoded RNAseq

Data Science Club - STAR aligner software set for RNASeq

Just a local clone and re-tag of nextflow/rnaseq-nf

rnaseq-pipeline

NGI-RNAseq is a bioinformatics analysis pipeline used for RNA-seq data analysis.

Nextflow pipeline for RNAseq data analysis

RNAseq-snakemake WF: FASTQC, SORTMERNA, TRIMMOMATIC, HISAT2, SAMTOOLS, HTSeq. Test Data. No Genome.

RNAseq-snakemake WF: FASTQC, SORTMERNA, TRIMMOMATIC, STAR, SAMTOOLS, HTSeq. Test Data. No Genome

Docker repository for bulk rnaseq docker used in Jupyter Notebook in Compute

Adding trinity assembler to base image from nf-core/rnaseq

broadinstitute/gtex_rnaseq

broadinstitute

GTEx RNA-seq pipeline: alignment (STAR), QC (RNA-SeQC), expression quantification (RSEM & RNA-SeQC)

docker container for cwl rnaseq pipeline (includes tophat2 and hisat2)

container to run nf-core rnaseq pipeline in the pilm environment

mpgagebioinformatics/encode_rnaseq_eclip

mpgagebioinformatics

Integration of RNAseq and eCLIP data from ENCODE. An example with KHSRP.

biocorecrg/rnaseq2019

biocorecrg

Executables used for CRG-Biocore's RNAseq course 2019