Australian Genome Research Facility

https://bedtools.readthedocs.io/en/latest/

A suite of tools to extract information from output files associated with bioinformatics software

Base container of exome wdl tools, allows cache splitting over one container

https://software.broadinstitute.org/gatk/

Create alpine linux version

Docker container with bwa 0.7.17 and samtools 1.9

http://www.htslib.org/doc/samtools.html

http://vcftools.sourceforge.net/

https://broadinstitute.github.io/picard/

A container with binaries of bedtools and samtools

Same as standard biocontainers base but with the latest version of miniconda as noted by the tag