alexiswl

Use the appspec to convert yaml files to auto-completions

This container will tar and plot your data on the PromethION device before transferring.

Vep 89

Set of tools for nanopore data handling

Variant Effect Predictor from Ensembl (Version 92.4)

FastQC is a quality control tool for NGS data

Picard is a set of command line tools for manipulating high-throughput sequencing (HTS) data

Conda built Rsubread package. Version 1.5.3

RNASeqQC from MIT, version 1.1.8

multiqc is a way to visualise multiple qc outputs form separate samples.

multiqc is a way to visualise multiple qc outputs form separate samples.

Conda built container of bowtie2_2.3.3.1

Conda installation of picard

Tophat2 version 2.1.1, conda installation.

Sortmerna enables one to determine the rRNA content and its origins from an rnaseq sample

Samtools version 1.5 installation

Conda installation of stringtie 1.3.3

sortmerna is a package to determine rRNA levels within a set of samples.

Fork of biocontainers

Trim galore, version 0.4.4 conda installation

Albacore is a ONT program for converting raw fast5 data into fastq data

STAR alignment tool

multiqc is a way to visualise multiple qc outputs form separate samples.