Darin London

Container that downloads raw sequences from P. Falciparum into VOLUME /home/bwa_user/data

Entry Agent for aligning a sequence using dmlond/docker_bwa_aligner with mongo_agents

MongoAgent::Agent that splits a fastq file into subsets

MongoAgent::Agent that aligns subsets against a reference

MongoAgent::Agent that merges subset bam files into a single bam file

Script that monitors mongo_agent_alignment subtasks and submits mongo_agent_merge tasks

watches the mongodb tasks for each of the different agents in the demo alignment

seeds and indexex the reference files from ftp and inserts/updates the mongodb entry for the task

seeds the raw files from ftp and inserts/updates the mongodb entry for the task

Container which aligns a single ended, or paired end set of sequences using bwa and samtools

splits a large fastq file in the /home/bwa_user/data volume into small subsets for parallel alignment

base container for a bwa alignment container

Container which can add a publicly available fasta reference genome to a dmlond/bwa_reference_volume

Container with a volume where the bwa_aligner expects to find reference genomes