Daniel Romero-Guzmán

Docker image for SPAdes: https://github.com/ablab/spades

Docker image for ntJoin: https://github.com/bcgsc/ntJoin

Docker image for bedtools: https://github.com/arq5x/bedtools2

Docker image for RAILS+Cobbler (Includes BWA, minimap2 y samtools): https://github.com/bcgsc/RAILS

Docker image for BWA Aligner: https://github.com/lh3/bwa

Docker image for LINKS: https://github.com/bcgsc/LINKS

Docker image for BESST: https://github.com/ksahlin/BESST

Docker image for RiboDetector: https://github.com/hzi-bifo/RiboDetector

Docker image for SortMeRNA: https://github.com/biocore/sortmerna

Docker image for Trimmomatic: http://www.usadellab.org/cms/?page=trimmomatic

Docker image for PandaSeq: https://github.com/neufeld/pandaseq

Docker image for fastq-join: https://github.com/brwnj/fastq-join

Docker image for fastp: https://github.com/OpenGene/fastp

Docker image for cutadapt: https://cutadapt.readthedocs.io/en/stable/

Docker image for TACO: https://tacorna.github.io/

Docker image for HyPo: https://github.com/kensung-lab/hypo

Docker image for Medaka: https://github.com/nanoporetech/medaka

Docker image for NextDenovo: https://github.com/Nextomics/NextDenovo

Docker image for MaSuRCA (includes POLCA and SAMBA): https://github.com/alekseyzimin/masurca

Docker image for Polypolish: https://github.com/rrwick/Polypolish

Docker image for NextPolish: https://github.com/Nextomics/NextPolish

Docker image for Pilon: https://github.com/broadinstitute/pilon

Docker image for Scallop: https://github.com/Kingsford-Group/scallop

Docker image for StringTie: https://github.com/gpertea/stringtie

Docker image for Trinity: https://github.com/trinityrnaseq/trinityrnaseq/wiki

Docker image for Trans-ABySS: https://github.com/bcgsc/transabyss

Docker image for Unicycler: https://github.com/rrwick/Unicycler

Docker image for CANU: https://github.com/marbl/canu