DTU Food

Service for identifying virulence factors based on wgs data

Service for identifying plasmids based on wgs data

Official ResFinder. Identifies antimicrobial resistance genes and chromosomal mutations in bacteria.

Predicts Salmonella serotypes from WGS data, using SeqSero or SeqSero2 and MLST type.

SerotypeFinder - Identifies serotype of sequenced isolates of E. coli.

pMLST - Plasmid Multi-Locus Sequence Typing

MLST - multi-locus sequence typing

KmerFinder - - species identification

MyKMAfinder -- custom database construction and species identification

The Center for Genomic Epidemiology's bacterial analysis pipeline

Git and Docker Guides and Walk-throughs for Novices

RUCS - Rapid Identification of PCR Primers Pairs for Unique Core Sequences