Genomic Paris Centre

A pipeline and a framework for NGS analysis (RNA-Seq and soon Chip-Seq)

A post sequencing QC tool for Oxford Nanopore sequencers

Cutadapt removes adapter sequences from high-throughput sequencing data.

Differential gene expression analysis based on the negative binomial distribution.

A wrapper tool around Cutadapt and FastQC to apply quality and adapter trimming to FastQ files.

Oxford Nanopore Technologies Guppy basecaller Software on GPU mode.

Oxford Nanopore Technologies Guppy basecaller Software.

https://github.com/Kingsford-Group/ribomap

Tool to process CITE-seq data (from https://github.com/Hoohm/CITE-seq-Count)

Interface to HDF5 files of the Oxford Nanopore fast5 file format.

Adapter trimmer for Oxford Nanopore reads

Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads.

Easily install all my long read processing and analysis scripts simultaneously.

Velocyto is a library for the analysis of RNA velocity.