getwilds

Docker image for geospatial R packages in Fred Hutch OCDO's WILDS

Docker image for PRS-CSx in Fred Hutch OCDO's WILDS

Docker image for the use of Annovar using hg19 in Fred Hutch OCDO's WILDS

Container image for Strelka variant caller in WILDS

Docker image for HISAT2 alignment tool in Fred Hutch OCDO's WILDS

Docker image for the use of Salmon in Fred Hutch OCDO's WILDS

Container image for the use of umi_tools in Fred Hutch OCDO's WILDS

Docker image for VarScan variant caller with SAMtools and bcftools dependencies

Docker image for Bowtie 2 in Fred Hutch OCDO's WILDS

Docker image for Bowtie in Fred Hutch OCDO's WILDS

Docker image for the use of bcftools in Fred Hutch OCDO's WILDS

Docker image for STARLING in Fred Hutch OCDO's WILDS

Docker image for CellBender in Fred Hutch OCDO's WILDS

Container image for the use of STAR in Fred Hutch OCDO's WILDS

Container image for the use of GATK in Fred Hutch OCDO's WILDS

Docker image for the use of bedtools in Fred Hutch OCDO's WILDS

Docker image for the use of bwa in Fred Hutch OCDO's WILDS

Docker image for the use of Samtools in Fred Hutch OCDO's WILDS

Docker image for Ollama in Fred Hutch OCDO's WILDS, with OpenCode for LLM-driven coding workflows

Docker image for GWASLab, a Python toolkit for GWAS summary statistics

Docker image for OHDSI HADES in Fred Hutch OCDO's WILDS

Docker image for GA4GH VRS-Python in Fred Hutch OCDO's WILDS

Docker image for Pairtree in Fred Hutch OCDO's WILDS

Docker image for SingleR single-cell RNA-seq cell type annotation in Fred Hutch OCDO's WILDS

Docker image for scater single-cell RNA-seq QC and visualization in Fred Hutch OCDO's WILDS

Docker image for scran single-cell RNA-seq analysis in Fred Hutch OCDO's WILDS

Docker image for DropletUtils single-cell droplet data utilities in Fred Hutch OCDO's WILDS

Docker image for edgeR differential expression analysis of RNA-seq data in Fred Hutch OCDO's WILDS

Docker image for mosdepth, fast BAM/CRAM depth calculation, in Fred Hutch OCDO's WILDS

Docker image for Seurat single-cell RNA-seq analysis in Fred Hutch OCDO's WILDS