gfanz

Genomics for Aotearoa New Zealand

Sponsored OSS

Community Organization

Genomics for Aotearoa New Zealand

New Zealand

Displaying 1 to 25 of 30 repositories

gfanz/seqkit

16

0

By gfanz

Updated 2 days ago
SeqKit - a cross-platform and ultrafast toolkit for FASTA/Q file manipulation
Data Science
gfanz/bowtie2

260

0

By gfanz

Updated a month ago
DNA sequence read aligner.
Data Science
Machine Learning & AI
gfanz/bcftools

200

0

By gfanz

Updated a month ago
BCFtools is a program for variant calling and manipulating VCF and BCF files.
Data Science
Machine Learning & AI
gfanz/discosnp

9.8K

0

By gfanz

Updated 2 months ago
DiscoSnp++ and DiscoSnpRad
Data Science
Machine Learning & AI
gfanz/polyrad

17

0

By gfanz

Updated 6 months ago
GFANZ container for the software polyRAD
gfanz/bwa

267

0

By gfanz

Updated a year ago
DNA sequence read aligner.
Data Science
Machine Learning & AI
gfanz/atropos

67

0

By gfanz

Updated 2 years ago
Atropos is tool for specific, sensitive, and speedy trimming of NGS reads.
Data Science
Machine Learning & AI
gfanz/solexaqa

81

0

By gfanz

Updated 2 years ago
Sequence quality stats and visualisation of second-gen sequencing data.
Data Science
Machine Learning & AI
gfanz/trimmomatic

110

1

By gfanz

Updated 2 years ago
Trimmomatic is a sequence read trimming tool for Illumina technology.
Data Science
Machine Learning & AI
gfanz/template

303

0

By gfanz

Updated 2 years ago
Sample docker container from a set of template files.
Integration & Delivery
Operating Systems
Security
gfanz/tassel5

225

0

By gfanz

Updated 2 years ago
Trait Analysis by aSSociation, Evolution and Linkage
Data Science
Machine Learning & AI
gfanz/prokka

203

0

By gfanz

Updated 2 years ago
Prokka: rapid prokaryotic genome annotation
Data Science
Machine Learning & AI
gfanz/gbs-preprocess

141

0

By gfanz

Updated 2 years ago
Removes read through bar codes from GBS sequences.
Data Science
Machine Learning & AI
Operating Systems
gfanz/ipyrad

159

0

By gfanz

Updated 3 years ago
ipyrad SNP calling pipeline.
Data Science
Machine Learning & AI
gfanz/mosdepth

349

1

By gfanz

Updated 3 years ago
Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing.
Data Science
Monitoring & Observability
gfanz/freebayes

244

0

By gfanz

Updated 3 years ago
Bayesian genetic variant detector.
Data Science
Machine Learning & AI
gfanz/picard-tools

162

0

By gfanz

Updated 3 years ago
Picard is a set of command line tools for manipulating high-throughput sequencing data.
Data Science
Integration & Delivery
gfanz/samtools

136

0

By gfanz

Updated 3 years ago
SAMtools is a set of utilities for interacting with and post-processing DNA sequence read alignments
Data Science
gfanz/tassel3

146

0

By gfanz

Updated 3 years ago
tassel 3 with modified enzymes to use the uneak pipeline.
Data Science
Machine Learning & AI
gfanz/pgdspider

165

0

By gfanz

Updated 4 years ago
An automated data conversion tool for connecting population genetics and genomics programs
Data Science
Machine Learning & AI
gfanz/structure-threader

231

0

By gfanz

Updated 4 years ago
Parallelize and automate the runs of Structure, fastStructure, MavericK and ALStructure software.
Data Science
Machine Learning & AI
gfanz/meraculous

298

0

By gfanz

Updated 5 years ago
Whole genome assembler for NGS reads (Illumina).
Data Science
Machine Learning & AI
gfanz/sismonr

182

0

By gfanz

Updated 5 years ago
Data Science
Languages & Frameworks
gfanz/seqhax

206

0

By gfanz

Updated 5 years ago
A seqtk-style toolkit for sequence analysis.
Data Science
Machine Learning & AI
gfanz/gbs-snp-crop

234

0

By gfanz

Updated 5 years ago
GBS SNP Calling Reference Optional Pipeline
Data Science
Machine Learning & AI