giffordlab

Launch scripts and containers for our Jupyterhub server.

System (local) user Jupyter notebook image for use with dockerspawner.

Single user Jupyter notebook image for use with dockerspawner.

Jupyter datascience notebook, with GPU capabilities

Jupyter minimal notebook, with GPU capabilities

Jupyter scipy notebook, with GPU capabilities

CUDA base image

For Spring 2017 6.874 course

Docker image for the DeepSEA method (Troyanskaya lab).

Wrapper image for a customized Gifford lab bcbio-nextgen pipeline.

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis.

Docker image for the DeepBind method (Frey lab).