Hyunmin

for differential expression analysis

10x genomics

https://github.com/alexdobin/STAR

https://github.com/dib-lab/khmer

bwa + samtools + picard

https://github.com/OpenGene/fastp

seurat for single cell analysis

docker for smrna analysis

python container for rine2020

https://github.com/deweylab/RSEM

with pandas

https://hub.docker.com/_/perl

https://github.com/rajewsky-lab/mirdeep2