irikas

Pegasus for Single Cell Analysis (https://pegasus.readthedocs.io/en/stable/index.html)

cellranger10.0.0 & nextflow

spaceranger 4.0.1 & nextflow

cellranger-2.1.0 and nextflow

cellranger-atac 2.2.0 & nextflow

BD Rhapsody seq pipeline v3.0 w/ nextflow

Trekker v1.4.0 (docker). nuclei_locater_toplevel.sh: SCRIPT_DIR=/opt/trekker-v1.4.0/ OUT_DIR=/outs/