kundajelab

Docker image for aligning DAP-seq for Genesis project

Image for DAP-seq peak discovery for Genesis project

Image for computing BAM coverage for Genesis project

Image for DAP-seq peaks QC for Genesis Project

Image for custom DAP-seq python tools for Genesis project

Image for pseudobulk operations in IGVF pseudobulking pipeline

Image for tools that interact directly with the IGVF Portal

Image for visualizing distributions of QC properties from CSVs and TSVs

Image for calling peaks via MACS3 and peak-filtering, part of the IGVF pseudobulking pipeline.

Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)

HUMBIO51 course image

For use with LS-GKM