kundajelab

Image for calling peaks via MACS3 and peak-filtering, part of the IGVF pseudobulking pipeline.

Image for tools that interact directly with the IGVF Portal

Image for pseudobulk operations in IGVF pseudobulking pipeline

Image for visualizing distributions of QC properties from CSVs and TSVs

Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)

HUMBIO51 course image

For use with LS-GKM

Base images with Ubuntu, CUDA, cuDNN, and Miniconda installed

3DChromatin_ReplicateQC