kwellswrasman

Single cell RNA seq tools in R + dropt

Images for single cell RNA-seq analysis

Container for the analysis of single cell long read data

A simple docker containing picard tools

General analysis of ATAC-seq and ChIP-seq data for alignment, trimming, and peak calling

R packages for atac and chip seq analysis

An image for preprocessing of RNA-seq data.

Contains packages necessary to run `fastq-screen`

Container to use for the analysis of RNA-seq data.

Docker image with DESeq2, ggplot, and other useful tools for differential expression of RNA-seq.

R packages for single cell RNA-seq analysis

Scar for ambient RNA removal

Dropkick for cell identification

T1K package + helper python functions