levim

cellranger 3.1.0 for scRNA preprocessing

containerized development ide

Clonal tree reconstruction via phylowgs

Random Forest prediction engine

run Cite-seq-Count

mixcr 3.0.9 for TCR analysis (bulk and targeted)

vdjtools 1.2.1 + plotting modules

dffs NN based image manipulation with gpu component

executable for snpeff version 4.3t WITH GRCh37 database

Dependencies for vcf2maf + vep annotation

Executable for facets version 0.5.14

Executable for strelka 1 version 1.0.15

executable for samtools version 1.9

executable for picard (2.11)

executable for bwa 0.7.17

Executable for mutect1 version 1.1.7

Genomics container for RNAseq expression analysis

Deployable NVim + R statistical environment/IDE

container to run vep with it's dependencies (samtools)

Executable for cutadapt version 1.16

Various Genomics Processing Tools

Various mutation calling tools

Example engine of dockerized snakemake pipelines