limesbonn

kallisto dockerfile https://pachterlab.github.io/kallisto/about

cuda with tools and rstudio

rstudio with cuda

hisat2

Bowtie 1.1.1

HiSat fast aligner

TopHat 2.1.0 with Bowtie 2.2.6

Ubuntu

Salmon transcript-level quantification RNA-seq data. https://github.com/COMBINE-lab/salmon