luigilamparelli

Python with pandas, xlsxwriter, pyyaml

https://github.com/davidebolo1993/NanoR

https://www.gear-genomics.com/docs/alfred/

Guppy basecaller by Oxford Nanopore Technologies

https://github.com/nanoporetech/megalodon

https://github.com/epi2me-labs/modbam2bed

https://github.com/genohm/slims-python-api

https://github.com/lh3/minimap2