makaho

TINGe v1.062 with openMPI

discovardenovo installation

Conda-based collection of multiple aligners bowtie, hisat2, kallisto, STAR parallel-fastq-dump

samtools and stringtie + zstd

Image to combine hisat2 for alignment and zstd to compress the resulting SAM

Runs the RNA-Seq analysis tool Shiny-Seq

Forked kallisto with sratoolkit

Shiny server to run genomics analysis suite

single-cell pipeline for kallisto with tools needed for sra conversion