michaelfranklin

Container of Peter Mac Utility Scripts

BWA + Samtools to allow piping between bwa mem and samtools view

VarDictJava tagged docker containiers

GRIDSS: the Genomic Rearrangement IDentification Software Suite (test)

Manta Structural Variant Caller (1.4.0 - 1.6.0)

Commands to manipulate VCF files

Samtools for manipulating next-generation sequencing data

Strelka2 germline and somatic small variant caller