NeherLab

neherlab/treetime

NeherLab

Maximum-likelihood phylodynamic inference

neherlab/treetime_builder

NeherLab

Development environment for neherlab/treetime. You likely don't need this.

neherlab/pangraph_builder

NeherLab

Development environment for neherlab/pangraph. You likely don't need this.

neherlab/treeknit

NeherLab

Infers reassortment from the trees of the segments of a virus

neherlab/pangraph

NeherLab

A bioinformatic toolkit to align genome assemblies into pangenome graphs