Niema Moshiri

Minimal Docker image for BWA + samtools using BWA image base

Minimal Docker image for Bowtie2 + samtools using Bowtie2 image base

Fast consensus genome reconstruction of multiple viruses from a mixed sample

Minimal Docker image for ViralConsensus using Alpine base

Minimal Docker image for bcftools using Alpine base

Minimal Docker image for samtools using Alpine base

Minimal Docker image for UCSD CSE 185 grading

Minimal Docker image for UCSD CSE 185 coding

Docker environment for minibwa

Minimal Docker image for Minigraph using Alpine base

Minimal Docker image for Minimap2 using Alpine base

Docker environment for bowtie2

Minimal Docker image for UCSD CSE 100 grading

Minimal Docker image for UCSD CSE 100 coding

Reference-guided multiple sequence alignment of viral genomes

Docker environment for SPAdes