Niema Moshiri

Fast consensus genome reconstruction of multiple viruses from a mixed sample

Docker environment for minibwa

Docker environment for RepeatNet

Reference-guided multiple sequence alignment of viral genomes

Docker environment for rammap + samtools

Minimal Docker image for Minimap2 + samtools using Minimap2 image base

Minimal Docker image for samtools using Alpine base

Docker environment for rammap

Minimal Docker image for Minimap2 using Alpine base

Docker environment for RecBole

Minimal Docker image for pTrimmer using Alpine base

Minimal Docker image for bcftools using Alpine base

Docker environment for SPAdes

Minimal Alpine image with bash

Minimal Docker image for LoFreq using Alpine base

Minimal Docker image for HISAT2 using Alpine base

Minimal Docker image for Unimap using Alpine base

Docker environment for FastQC

Minimal Docker image for STAR using Alpine base

Minimal Docker image for Minigraph using Alpine base

Docker environment for MAFFT

Minimal Docker image for iVar using Alpine base

Minimal Docker image for tn93 using Alpine base

Docker environment for bedtools

Minimal Docker image for MetaProFi using Alpine base

Docker environment for DIA-NN

Docker environment for GNPS_MASST

Docker environment for krepp

Docker environment for LRURec

Docker environment for GRU4Rec's official PyTorch implementation