Niema Moshiri

Docker environment for GRU4Rec's official TensorFlow implementation

Minimal Docker image for GATK using Alpine base

Docker environment for GRU4Rec's official PyTorch implementation

Docker environment for GNPS_MASST

Minimal Docker image for freebayes using Alpine base

Docker environment for FastQC

Docker environment for FastTree

Docker environment for fastp

Docker image with tools needed to create various types of documents

Docker environment for DIA-NN

Docker environment for DecentTree

Minimal Docker image for Cutadapt using Alpine base

Minimal Docker image for UCSD CSE 185 coding

Minimal Docker image for UCSD CSE 185 grading

Minimal Docker image for UCSD CSE 6R grading

Minimal Docker image for UCSD CSE 100 grading

Minimal Docker image for UCSD CSE 100 coding

Minimal Docker image for BWA + samtools using BWA image base

Docker environment for BWA

Minimal Docker image for Bowtie2 + samtools using Bowtie2 image base

Docker environment for bowtie2

Docker environment for bedtools

Minimal Docker image for bcftools using Alpine base

Minimal Docker image for samtools using Alpine base

Minimal Docker image for Minimap2 using Alpine base

Minimal Alpine image with bash

Fast consensus genome reconstruction of multiple viruses from a mixed sample

Reference-guided multiple sequence alignment of viral genomes

Docker environment for minibwa

Docker environment for RepeatNet