nunoagostinho

psichomics, an interactive R package to quantify, analyse and visualise alternative splicing data

Docker to run GDC Data Transfer Tool (gdc-client)

Docker to run splicing analysis using VAST-TOOLS

Docker to perform big matrix correlations

rMATS 4

Docker to run splicing analysis using rMATS

Docker with R and packages related to machine learning

Docker to run multiqc to combine bioinformatic log reports

Docker to run BWA for aligning sequences against a reference genome

Docker to run CIRI-AS for splicing quantification of circular RNA

Docker to run sailfish for quantification of isoform abundance

Docker to run TopHat for splice junction mapping

Docker to run RSEM for transcript quantification

Docker for parallel-fastq-dump

Docker image for Whippet

Docker to run splicing analysis using MISO

Docker to run splicing analysis using SUPPA