odiogosilva

Bananas

TriFusion: Streamlining phylogenomic data gathering, processing and visualization using command line

Toolkit for processing sequences in FASTA/Q formats

Base image for assemblerflow templates

Reading/writing/editing/indexing/viewing SAM/BAM/CRAM format

INNUCA true coverage standalone

Short read de novo assembler using de Bruijn graphs

Automatically optimise three of Velvet's assembly parameters.

St. Petersburg genome assembler – is an assembly toolkit containing various assembly pipelines

Strategic Kmer Extension for Scrupulous Assemblies

St. Petersburg genome assembler – is an assembly toolkit containing various assembly pipelines

Determine which reference sequence is more likely to be present in a given sample

Reads mapping against target sequences, checking mapping and consensus sequences production

In silico pathogenic typing directly from raw Illumina reads Edit Add topics

Toolkit for assembly and analysis of RADseq data

Bacterial genome annotation

Scan contig files against PubMLST typing schemes

Bowtie2 and Samtools combo image

INNUca environment dependencies

Automated genome assembly improvement and variant detection tool

A quality control tool for high throughput sequence data.

A flexible read trimming tool for Illumina NGS data