pvdb90

knn smoothing for single cell RNA seq

velocyto.py

A set of RNA-seq tools

trimmomatic on top of openjdk

fastqc built on miniconda

multiqc on top of miniconda3

Kallisto built on top of miniconda3 image

SNPsplit + SAMtools

Multiqc, sickle, cutadapt

Drop-seq tools 1.12 from McCarrol lab + STAR aligner on top of picard image from broadinstitute

snakemake installed on top of conda3