Reed College Biology Department

Logistic principal components analysis

The Signaling Pathway Reconstruction Analysis Streamliner (SPRAS) Python package

Maximum Edge Orientation pathway reconstruction algorithm

Omics Integrator 2 pathway reconstruction algorithm

Omics Integrator 1 pathway reconstruction algorithm

All Pairs Shortest Paths pathway reconstruction algorithm

Min Cost Flow pathway reconstruction algorithm

PathLinker pathway reconstruction algorithm

Random Walk with Restart pathway reconstruction algorithm

Cytoscape and py4cytoscape

DOMINO active module identification algorithm repurposed for pathway reconstruction

TieDIE pathway reconstruction algorithm