rpetit3

A Dockerized version of Staphopia's Analysis Pipeline (https://staphopia.emory.edu)

ena-dl: A script to automate downloading runs from ENA.

A base Ubuntu 16.04 image with Bioconda and Nextflow set up.

A simple pipeline to clean up paired end Illumina reads.

A Dockerized version of SPAdes to be used with Cancer Genomics Cloud