Perry

https://github.com/torognes/vsearch

https://github.com/kylebittinger/brocc

Quantisnp w/ MATLAB Compilter Runtime

https://bitbucket.org/biobakery/metaphlan2

Snpeff w/ grch37 that works with snakemake wrapper

https://www.cog-genomics.org/static/bin/plink181012/plink_linux_x86_64.zip

https://github.com/ck37/varimpact

Dockerizd version of GEMINI

https://github.com/Danko-Lab/dREG.HD

Contains https://github.com/Danko-Lab/dREG

Container w/ py27 and cruzdb

Dockerfile w/ pre-build run-proseq env and singularity.

Split fq files.

Anaconda and singularity are installed so you can run Snakemake w/ singularity on mac.

Minimal jupyter