LIMES Institute

Hisat2 alignment pipeline

Image to reproduce the results of the manuscript by Warnat-Herresthal et al. 2019.

A simple docker wrapper of the dropSeqPipe https://github.com/Hoohm/dropSeqPipe

A simple RNA-seq pipeline

Runs fastqc and combines all qcs to a multiqc-report

This is a base image for all your alignment and qc needs