Sam Abbott

An R package for accessing and summarising the World Health Organisation Tuberculosis data

Utility Functions for Infectious Disease Modelling

Using WHO Tuberculosis data to forecast future incidence rates

Shiny app to allows interactive exploration of a dynamic infections disease models.

Jenkins instance with docker and docker-compose

A Twitter bots which tweets a randomly selected Rstudio cheatsheet each day.

Personal CV

Source code and container for my personal website http://www.samabbott.co.uk

Tools for quickly and easily creating twitter StackOverflow bots

Estimate and visualise zoonotic tuberculosis incidence.

Modelling Tuberculosis, including BCG vaccination, in England.

Assessing the evidence for the 2005 BCG policy change in England

Estimating the effect of the 2005 change in BCG policy in England: A retrospective cohort study

Speed up Discrete Markov Model Simulations.

Explore missing data in the Enhanced Tuberculosis Surveillance system.

PhD thesis submitted to the University of Bristol.

Model agnostic cost effectiveness plotting

A repository containing presentations that I have given or that I am in the process of writing

An R package that contains functions and documentation to clean and munge TB data from England

Analysis to explore the association of BCG vaccination and TB outcomes.

Slides and Practicals for the BIDD modelling short course

Adding in GPU acceleration via CUDA to the rocker/tidyverse container

Benchmarking Libbi with CPU and GPU backends on increasingly complex infectious disease models

R package for managing CPRD records

[RBi](https://github.com/libbi/rbi) is an `R` interface to [libbi](http://libbi.org).

Introduction to GAMs talk

A ShinyProxy instance running in docker

R code and log data for the h2o tweets twitter bot https://twitter.com/h2o_tweets

A shiny app for visualising the Funding Circle loanbook and your personal loanbook