South East Genomics Laboratory Hub

https://github.com/moka-guys/gstt_primer_design

https://git.kingspm.uk/KingsPM/genasist

Git repo: https://git.kingspm.uk/KingsPM/sqvd

https://git.kingspm.uk/KingsPM/vasa

Backup for GSTT DNAnexus docker image. Source unknown

Backup for GSTT DNAnexus docker image. Source unknown

Cloned from https://hub.docker.com/r/broadinstitute/picard

Created from https://www.bioinformatics.babraham.ac.uk/projects/fastqc/

Fork from github.com/illumina/hap.py

https://github.com/moka-guys/SCIP

https://github.com/moka-guys/polyedge

FH Polygenic risk score app https://github.com/moka-guys/fhprs

Github repo: https://github.com/moka-guys/oncodeep_upload

DNAnexus DXtoolkit, upload agent and script for cloning/building NF pipelines/applets

https://github.com/moka-guys/seglh-cnv

https://github.com/moka-guys/gstt_variant_dashboard

https://github.com/moka-guys/ALU_insertion

copy of biocontainer docker images used in NF pipelines

copy of biocontainer docker images used in NF pipelines

copy of biocontainer docker images used in NF pipelines

copy of biocontainer docker images used in NF pipelines

copy of biocontainer docker images used in NF pipelines

copy of biocontainer docker images used in NF pipelines

copy of biocontainer docker images used in NF pipelines

copy of biocontainer docker images used in NF pipelines

copy of biocontainer docker images used in NF pipelines

copy of biocontainer docker images used in NF pipelines

dockerized mosdepth software

SNP HAplotyper, see code at https://github.com/moka-guys/SNP_haplotyper