Stefano Ghignone

bowtie2 - Fast and sensitive read alignment, build from bioconda

SAMtools and BCFtools (v1.10) for manipulating next-generation sequencing data, from bioconda

The BWA v0.7.17 read mapper, build from bioconda

openjdk:8 based release of CANU, a PacBio assembler

Build based on pilon bioconda distribution (v.1.23), with fixed memory issue

Bioperl 1.7.7 container, based on alpine linux

MrBayes v3.2.7a w/ mpirun