szarate

SURVIVOR: https://github.com/fritzsedlazeck/SURVIVOR

Jasmine: https://github.com/mkirsche/Jasmine/

svviz: https://github.com/svviz/svviz

Delly: https://github.com/dellytools/delly

Breakdancer: https://github.com/genome/breakdancer

SVTyper: https://github.com/hall-lab/svtyper

LUMPY: https://github.com/arq5x/lumpy-sv

Preparation for Parliament2 on WDL

CNVnator: https://github.com/abyzovlab/CNVnator

BreakSeq2: http://bioinform.github.io/breakseq2/

Manta: https://github.com/Illumina/manta