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Elisha Roberson

Community User

Washington University in St. Louis

https://www.robersonlab.org⁠

RepositoriesStarred

Displaying 1 to 30 of 33 repositories

image
thatdnaguy/kallisto_bus
thatdnaguy

Ubuntu 20.04. kallisto v0.50.1. bustools v0.43.2.

1m

643

image
thatdnaguy/picardtools
thatdnaguy

Base: broadinstitute/picard:3.1.1. Picard v3.1.1.

1y

659

image
thatdnaguy/plink
thatdnaguy

plink v1.0.7 built using a base image that contains Snakemake for use on WUSTL RIS cluster.

2y

280

image
thatdnaguy/rnastar
thatdnaguy

Ubuntu 20.04. RNASTAR v2.7.11b.

2y

1.1K

image
thatdnaguy/snpduo
thatdnaguy

Docker version of SNPduo command-line tool compiled with Snakemake for WUSTL RIS compatibility.

2y

285

image
thatdnaguy/seqtk
thatdnaguy

Ubuntu 20.04. seqtk v1.4.

2y

315

image
thatdnaguy/samtools
thatdnaguy

Ubuntu 20.04. samtools v1.19.2.

2y

285

image
thatdnaguy/salmon
thatdnaguy

Ubuntu 20.04. salmon v1.10.0.

2y

486

image
thatdnaguy/r_for_cluster
thatdnaguy

R v4.4.0 image for the WUSTL RIS cluster. Based on our lab Ubuntu image that includes snakemake.

2y

10K+

image
thatdnaguy/multiqc
thatdnaguy

Ubuntu 20.04. MultiQC v1.21.

2y

10K+

image
thatdnaguy/gatk
thatdnaguy

Ubuntu 20.04. GATK v4.4.0.0.

2y

215

image
thatdnaguy/featurecounts
thatdnaguy

Ubuntu 20.04. featurecounts v2.0.6.

2y

573

1

image
thatdnaguy/fastqc
thatdnaguy

Ubuntu 20.04. FastQC v0.12.1.

2y

319

image
thatdnaguy/cutadapt
thatdnaguy

Ubuntu 20.04. Python 3.6. Cutadapt 4.7.

2y

2.5K

image
thatdnaguy/compare_order
thatdnaguy

Compares order of reads in paired FASTQ files. Includes Snakemake for WUSTL RIS cluster usage.

2y

355

image
thatdnaguy/bwa
thatdnaguy

bwa v0.7.17. Ubuntu 20.04.

2y

1.0K

image
thatdnaguy/bowtie2
thatdnaguy

bowtie2 v2.5.3. Ubuntu 20.04.

2y

299

image
thatdnaguy/bowtie1
thatdnaguy

bowtie1 v1.3.1. Ubuntu 20.04.

2y

363