umichbfxcore

Single cell environment - Bioconductor base image w/ Seurat, Monocle, MAST, etc

Contains Natural Language Processing (nlp) tools for the Reproducible Computing workshop

Environment with commonly used R packages

Container for trimgalore used in Orochi suite of pipelines

Container for bismark used in Orochi suite of pipelines

bedtools, bedops, samtools, UCSC utilities

Container for fastq_screen used in Orochi suite of pipelines

Container for fastqc used in Orochi suite of pipelines