vacation

The Mass Cytometry pipeline for analysis of technologies such as CyTOF using the CATALYST.

Python module for working with PerkinElmer InForm software outputs.

Fork of ktistec by Todd Sundsted

This is a fork of the snac2 repository by grunfink from Codeberg

A tool for converting and deidentifying image files into OME tiff format.

An API server to transform text into images using using the diffusers library on CUDA hardware

A docker for executing a 16s workflow

Validate name and file expectations from InForm projects

Parse InForm outputs

AlignQC provides reports on long read sequencing runs based on their alignments

CLI and python module for the Bioconductor GSVA package. http://doi.org/10.1186/1471-2105-14-7

A fork of Polysolver (McGranahan N., et. al. https://doi.org/10.1016/j.cell.2017.10.001)

For post-VEP vcf2maf conversion with stable version tagging. NOT intended for executing the VEP.

Python module and CLI wrapper for Aran, Hu & Butte's xCell https://doi.org/10.1186/s13059-017-1349-1

Vanduul Space is a fan-made game inspired by Star Citizen

IDP-fusion is a hybrid-seq fusion gene/isoform tool by Kin Fai Au.

Isoform Detection and Prediction (IDP) from short and long read sequencing. developed by Kin Fai Au

LSC is a long read error correction tool developed by Kin Fai Au and Pegah T Afshar.

A fork of Standford's SpliceMap -- Copyright (c) 2010 Kin Fai Au and John Chong Mu.

Facets by R Shen and VE Seshan calculates tumor purity (https://doi.org/10.1093/nar/gkw520)