Willmund Lab

A fast and sensitive gapped read aligner

GenomeTester4: toolkit for performing set operations on k-mer lists

Falco: FastQC Alternative Code

Ultrafast all-in-one preprocessing and quality control for FastQ data.

SRA Toolkit from NCBI is a collection of tools for using data in the Sequence Read Archives.

Several stand-alone programs for the prediction and comparison of RNA secondary structures

Widely used program for designing PCR primers.

Ultrafast, bias-aware transcript quantification from RNA-seq data.

Annotation tool designed to identify and annotate chloroplast genomes

Ultrafast RNA-seq aligner

Robust suite for manipulating and analyzing SAM/BAM files

Utilities for handling Unique Molecular Identifiers (UMIs) and cell barcodes

Toolkit for robust genomic analyses.

Quality control checks on raw high-throughput sequencing data

Utility for handling GFF/GTF files

Lightweight tool for processing FASTA and FASTQ files

Comprehensive quality control and analysis for NGS data

Identifies translation initiation sites from ribosome profiling data.

Removes adapter sequences, primers, and other unwanted artifacts from sequencing reads.