Zavolan Lab

ZARP: a generic RNA-Seq analysis workflow process and analyze Illumina short-read sequencing data.

Generates ASCII-style pileup of read alignments

probabilistic identification of protein-RNA interactions from CLIP-seq data

rcrunch_python

Inference of regulatory motifs from multiple alignments

CLIPper - CLIP peak enrichment recognition

MultiQC is a tool to aggregate bioinformatics results across many samples into a single report.

R with the packages optparse, gplots, RColorBrewer, rtracklayer, edgeR