Zymo Research

This is a Docker Image for bcl-convert, an Illumina demultiplexing tool

Used in aladdin-metatranscriptome-assembly pipeline

Variant annotation portion of the VirSieve pipeline

Variant calling and filtering portion of the VirSieve pipeline

Alignment and read preprocessing for the VirSieve Pipeline

Docker image for running RNAseq nextflow pipeline on Aladdin

Docker image for running smRNAseq nextflow pipeline on Aladdin

docker image for running aladdin-shotgun pipeline

Repository for FIGARO image

Docker image for running custom processes on aladdin-ampliseq

Temp repo to test with fusion

Illumina bcl2fastq conversion software

Primer removal portion of the VirSieve pipeline using iVar

Find primer coordinates for bisulfite amplicon sequences

Automated build of MIQ score calculating image using Zymo Research gut standard reference data

Bcl2fastq2