alexcoppe/fastx
Dockerized FASTX-Toolkit based on Alpine Linux.
Image
1
974
alexcoppe/fastx repository overview
Dockerized FASTX-Toolkit
[FASTX-Toolkit] (http://hannonlab.cshl.edu/fastx_toolkit/index.html) FASTQ/A short-reads pre-processing tools
Usage:
Docker Pull Command:
docker pull alexcoppe/fastx
Example:
docker run --rm -it -v $(pwd):/data alexcoppe/fastx fastx_quality_stats -i /data/in.fastq -o /data/stats.txt
docker run --rm -it -v $(pwd):/data alexcoppe/fastx fastq_quality_boxplot_graph.sh -i /data/stats.txt -o /data/quality.png -t "My Library"
docker run --rm -it -v $(pwd):/data alexcoppe/fastx fastx_nucleotide_distribution_graph.sh -i /data/stats.txt -o /data/nuc.png "My Library"
The above commands produce two png images with charts likes the following ones:
Tag summary
Content type
Image
Digest
Size
27.2 MB
Last updated
over 6 years ago
docker pull alexcoppe/fastx