alexcoppe

RNAsnp: efficient detection of local RNA secondary structure changes induced by SNPs

A tool to detect and visualize target gene fusions by scanning FASTQ files directly.

Dockerized hisat2

Dockerized samtools

Dockerized SnpSift based on anapsix/alpine-java image.

Dockerized bwa

Dockerized picard tools based on anapsix/alpine-java image.

Dockerized CIRCOS

Dockerized VarDictJava based on anapsix/alpine-java image.

Dockerized mutect based on anapsix/alpine-java image.

Dockerized SnpEff based on anapsix/alpine-java image.

BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files.

Dockerized VarScan 2 based on anapsix/alpine-java image.

Dockerized bedtools

Dockerized FASTX-Toolkit (lite version)

Dockerized gatk based on anapsix/alpine-java image.

Dockerized FastQC

Trimmomatic A flexible read trimming tool for Illumina NGS data.

Dockerized FASTX-Toolkit based on Alpine Linux.

Docker image to play around with PySpark.