HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads
Docker Pull Command:
docker pull alexcoppe/hisat2
Example (build the HISAT chromosome 19 index):
docker run --rm -it -v $(pwd):/working hisat2 hisat2-build --ss /working/splice_sites.txt --exon /working/exons.txt /working/Homo_sapiens.GRCh38.dna.chromosome.19.fa /working/tmp/hs_19
Content type
Image
Digest
sha256:0dab2424a…
Size
134.1 MB
Last updated
over 3 years ago
docker pull alexcoppe/hisat2