alexcoppe/snpsift repository overview

⁠Dockerized SnpSift⁠

⁠Usage:

⁠Docker Pull Command:

docker pull alexcoppe/snpsift

⁠Example:

⁠Filtering variants from a VCF based on call quality.

The VCF is in a Docker engine’s host directory mounted into the container using the -v flag.

docker run --rm -it -v $(pwd):/data alexcoppe/snpsift filter '( QUAL >= 30 )' /data/test.vcf