Trimmomatic A flexible read trimming tool for Illumina NGS data.
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Trimmomatic A flexible read trimming tool for Illumina NGS data.
Docker Pull Command:
docker pull alexcoppe/trimmomatic
Example (process paired-end sequencing 1.fastq.gz and 2.fastq.gz):
docker run --rm -it -v $(pwd):/working alexcoppe/trimmomatic PE -phred33 /working/1.fastq.gz /working/2.fastq.gz /working/output_forward_paired.fq.gz /working/output_forward_unpaired.fq.gz /working/output_reverse_paired.fq.gz /working/output_reverse_unpaired.fq.gz ILLUMINACLIP:/opt/adapters/TruSeq3-PE.fa:2:30:10 LEADING:3 TRAIL ING:3 SLIDINGWINDOW:4:15 MINLEN:36
Content type
Image
Digest
Size
61.9 MB
Last updated
over 6 years ago
docker pull alexcoppe/trimmomatic