Dockerized VarScan 2 based on anapsix/alpine-java image.
10K+
VarScan is a software for variant detection in massively parallel sequencing data.
Docker Pull Command:
docker pull alexcoppe/varscan
Example:
#Report germline, somatic, and LOH events at positions where both normal and tumor samples have sufficient coverage.
docker run --rm -it -v $(pwd):/data alexcoppe/varscan somatic /data/normal.pileup /data/tumor.pileup /data/output.basename
Content type
Image
Digest
Size
46.7 MB
Last updated
over 6 years ago
docker pull alexcoppe/varscan