asntech/facets-suite repository overview

⁠Docker image for FACETS-SUITE v2.0.8 and FACETS v0.6.1

⁠Step 1: snp-pileup-wrapper.R

A script that genotypes sites across the genome in both normal and tumor samples using snp-pileup

docker run -it asntech/facets-suite:v2.0.8_v0.6.1 snp-pileup-wrapper.R --help

⁠Step 2: run-facets-wrapper.R

Runs the FACETS v0.6.1

docker run -it asntech/facets-suite:v2.0.8_v0.6.1 run-facets-wrapper.R --help

⁠annotate-maf-wrapper.R

A script estimates the cancer-cell fractions (CCFs) of somatic mutations (MAF format) using purity and ploidy estimates from FACETS.

docker run -it asntech/facets-suite:v2.0.8_v0.6.1 annotate-maf-wrapper.R --help