asntech

A demo App for BIOS259 mini-course on computational reproducibility

ith.Variant: somatic variant detection from multi-sampled genomic sequencing data of tumor specimen

Intervene: a tool for intersection and visualization of multiple genomic region and gene sets

QDNAseq for copy number calls using shallow WGS data

FACETS-SUITE v2.0.8 and FACETS v0.6.1 for allele-specific copy-number calls

Infer Whole-genome doubling (WGD) and percent genome altered (PGA) using FACETS output

A multithread-enabale warpper of of Amplicon-Architect (AA) https://github.com/jluebeck/PrepareAA

GISTIC v2.0.23 - Genomic Identification of Significant Targets in Cancer