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cardiacmodelling/appredict-with-emulators

By cardiacmodelling

•Updated about 1 month ago

ApPredict (including chaste-libs and lookup tables).

Image
Machine learning & AI
Data science
1

2.0K

cardiacmodelling/appredict-with-emulators repository overview

⁠ApPredict with lookup tables pre-installed.

This image contains ApPredict and all the lookup tables which were available at build time.

The lookup tables are quite large so the image's compressed size is currently approx. 1.6Gb and can therefore take a few minutes to download on first use.

Built on top of appredict-no-emulators⁠.

⁠Source code

https://github.com/CardiacModelling/appredict-docker/tree/master/appredict-with-emulators⁠

⁠Prerequisites

Docker Container Runtime⁠ pre-installed.

(If you're using Singularity⁠ rather than Docker you can easily build a Singularity SIF (Singularity Image Format) image from a Docker image, and adapt the corresponding AP-Portal Singularity.sh script⁠)

⁠Install/Run

Documentation available at https://ap-nimbus.readthedocs.io/⁠.

⁠Tags

tagdate
(YYMMDD)
appredict-no-emulators⁠Chaste⁠ApPredict⁠changelog
1.0.02307211.0.0#f7b6baf⁠#250e593⁠First major release. Includes a minor bugfix in appredict-no-emulators⁠
0.0.102211220.0.9#f7b6baf⁠#250e593⁠Switched to using debian buster based chast-libs. Appredict now has --version argument, which shows versions of dependnacies being used.
0.0.92110150.0.4#682dce0⁠#9599e97⁠Now using factory method to include CellMl files: pre-compiled models, are avalable --model <model_name>. The numbering is kept for backwards-compatibility.
0.0.82010020.0.7#8261429⁠#8d02ac1⁠Updated chaste, Appredict and chaste libs
0.0.72007160.0.6#9c205f0⁠#b9883ea⁠Updated ApPredict
0.0.62006290.0.5#9c205f0⁠#5311f5f⁠Updating ApPredict to qNet variability and enhanced messages
Container's ApPredict dir now world-writable
0.0.52005110.0.4(1)#c4f5695⁠#f34b928⁠(1)Updating ApPredict to pre-qNet variability availability
INaL in lookup tables also available
0.0.42004220.0.4#c4f5695⁠#23aba22⁠New appredict-no-emulators
ApPredict now non-native build, with new lookup table availability
0.0.31912190.0.3#3adb96d⁠#727bc85⁠
0.0.21812210.0.2#12cdbe7⁠#0f75df0⁠
0.0.1181220Prototype!

(1) Anomaly! Accidentally overwrote appredict-no-emulators:0.0.4!

Tag summary

Content type

Image

Digest

sha256:aa9376817…

Size

2.2 GB

Last updated

about 1 month ago

docker pull cardiacmodelling/appredict-with-emulators